Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Cardiovascular
Cell type
Heart Ventricles
MeSH Description
The lower right and left chambers of the heart. The right ventricle pumps venous BLOOD into the LUNGS and the left ventricle pumps oxygenated blood into the systemic arterial circulation.

Attributes by original data submitter

Sample

age
55 year
sample type
tissue
tissue
heart right ventricle
sex
male
health state
ischemic (EF 25% LVEDD 6.9; RV normal size, moderate dysfunction)
dev stage
adult
donor ID
ENCDO439CAZ
lab
Bradley Bernstein, Broad
source
Shin Lin

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
14055262
Reads aligned (%)
93.5
Duplicates removed (%)
16.1
Number of peaks
42736 (qval < 1E-05)

hg19

Number of total reads
14055262
Reads aligned (%)
93.1
Duplicates removed (%)
16.5
Number of peaks
42652 (qval < 1E-05)

Base call quality data from DBCLS SRA